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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13407964_13408867_F

Intron Information:

Intron Rank:
144714
Intron Class:
major
Intron Phase:
Intron Coordinates:
13407964 - 13408867
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTAATTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
CTTCTTGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.2
38.5
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
76.8
0.6
0.9
70
41
Minor 5ss
34.7
-1.7
2.8
35.3
41.4
Minor BPS
50.5
0.09
2
71.97
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027993
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044550
13407158 - 13410695
3538