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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13408925_13409967_F

Intron Information:

Intron Rank:
144715
Intron Class:
major
Intron Phase:
Intron Coordinates:
13408925 - 13409967
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GATCTGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ATGACCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
74.8
38.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
71.5
0.48
1
66.6
43.6
Minor 5ss
34.2
-1.8
2.8
40.6
45.6
Minor BPS
49.9
0.07
1.8
68.17
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027993
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044550
13407158 - 13410695
3538