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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13423366_13426911_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13423366 - 13426911
Intron Length:
3546

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GCTCTCCTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
99.7
1.17
0.7
98.4
4.81
Major BPS
78.6
0.71
1
78.6
31
Major PPT
71.5
0.48
0.9
65.7
34.7
Minor 5ss
28.3
-2.5
4.2
48.7
47.5
Minor BPS
56.2
0.19
1.7
66.11
39.9

Associated Gene:

Gene:
RBP2
Ensembl Gene ID:
ENSAPLG00000002772
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002804
13413496 - 13427063
13568