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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13443673_13456777_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13443673 - 13456777
Intron Length:
13105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAACAT
U12 Branch Point Sequence:
CAGCACTGAACA
Flanking Amino Acid:
LAGVDDRKCMTTVSWEGDKL
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
55.8
0.15
1.3
63.4
42.8
Major PPT
71.9
0.49
1
72.6
37.6
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
48.9
-0
1.7
56.35
42

Associated Gene:

Gene:
RBP1
Ensembl Gene ID:
ENSAPLG00000002750
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002781
13440102 - 13457638
17537