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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13463810_13467946_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13463810 - 13467946
Intron Length:
4137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTTAAAT
Flanking Amino Acid:
ETWTETVKVLRHHYNESLRL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.5
0.69
0.9
75.7
37.3
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
74.5
0.85
1.2
85.98
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002699
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046572
13458837 - 13483147
24311
ENSAPLT00000030082
13463303 - 13489561
26259
ENSAPLT00000002722
13460452 - 13500393
39942