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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13479885_13500247_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
13479885 - 13500247
Intron Length:
20363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCTC
5'SS Class:
major
3'SS Sequence:
TAATTTCCATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.7
39.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
68.8
0.42
0.9
68.5
38
Minor 5ss
44.9
-0.5
2.8
62
42.6
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002699
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002722
13460452 - 13500393
39942