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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13575742_13577333_F

Intron Information:

Intron Rank:
126995
Intron Class:
major
Intron Phase:
Intron Coordinates:
13575742 - 13577333
Intron Length:
1592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
CATTCTGGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATGCTTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
70.6
0.46
1
64.3
41.2
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
49.2
0.02
1.7
66.58
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018438
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021548
13574686 - 13577676
2991