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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13690381_13749446_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
13690381 - 13749446
Intron Length:
59066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTATGCCTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCAAATTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.3
0.15
1.4
56.6
47.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.8
0.85
0.6
81.8
30.3
Minor 5ss
56.2
0.21
2.7
78.2
36.3
Minor BPS
50.7
0.1
1.8
69.56
41.1

Associated Gene:

Gene:
CLSTN2
Ensembl Gene ID:
ENSAPLG00000004577
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035984
13690304 - 13962096
271793