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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13718183_13749446_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13718183 - 13749446
Intron Length:
31264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTG
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCAAATTAATT
Flanking Amino Acid:
FNLWRCTVWSVNKHKPWIET
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
66.2
44.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.8
0.85
0.6
81.8
30.3
Minor 5ss
34.4
-1.8
3.4
47.3
48.1
Minor BPS
50.7
0.1
1.8
69.56
41.1

Associated Gene:

Gene:
CLSTN2
Ensembl Gene ID:
ENSAPLG00000004577
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020951
13718095 - 13948452
230358