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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13732232_13749446_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13732232 - 13749446
Intron Length:
17215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACTTGGG
5'SS Class:
major
3'SS Sequence:
TTTTCTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATCAAATTAATT
Flanking Amino Acid:
ICSESIQQKQVNKHKPWIET
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.2
51
45.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.8
0.85
0.6
81.8
30.3
Minor 5ss
30.6
-2.2
3.3
32.1
42.3
Minor BPS
50.7
0.1
1.8
69.56
41.1

Associated Gene:

Gene:
CLSTN2
Ensembl Gene ID:
ENSAPLG00000004577
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046632
13732195 - 13948452
216258