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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13749570_13869352_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13749570 - 13869352
Intron Length:
119783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCTTATTT
Flanking Amino Acid:
LDKDAPVPFAGEICAFKIHG
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.9
0.78
0.8
80.3
31.5
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
67
0.61
1.6
84.12
37

Associated Gene:

Gene:
CLSTN2
Ensembl Gene ID:
ENSAPLG00000004577
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020951
13718095 - 13948452
230358
ENSAPLT00000046632
13732195 - 13948452
216258
ENSAPLT00000020868
13749447 - 13949202
199756
ENSAPLT00000035984
13690304 - 13962096
271793
ENSAPLT00000004717
13604679 - 13948452
343774
ENSAPLT00000033007
13635512 - 13948452
312941
ENSAPLT00000023766
13746940 - 13948452
201513