Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1379426_1417401_R

Intron Information:

Intron Rank:

153517

Intron Class:

major

Intron Phase:

Intron Coordinates:

1379426 - 1417401

Intron Length:

37976

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTTGG

5'SS Class:

strong_major

3'SS Sequence:

AAATCTGTCTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATGAA

U12 Branch Point Sequence:

TGGTAATGAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

71.4

41.2

Major BPS

67.7

0.44

38.9

Major PPT

66.2

0.37

62.3

43.2

Minor 5ss

45.7

-0.5

2.5

58.3

46.4

Minor BPS

46.2

-0.2

65.92

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030065

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030480

1379412 - 1417473

38062