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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13869549_13871372_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13869549 - 13871372
Intron Length:
1824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGGGTGAA
5'SS Class:
major
3'SS Sequence:
TTACCTATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTCTCTTTGATT
Flanking Amino Acid:
PSGTNWKKSHKAVVHIQVKD
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1
67.4
33.4
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
74.7
0.56
0.9
67
38.9
Minor 5ss
26.9
-2.7
3.3
30.1
37.5
Minor BPS
76.7
0.92
1.1
86.38
34

Associated Gene:

Gene:
CLSTN2
Ensembl Gene ID:
ENSAPLG00000004577
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020951
13718095 - 13948452
230358
ENSAPLT00000046632
13732195 - 13948452
216258
ENSAPLT00000020868
13749447 - 13949202
199756
ENSAPLT00000035984
13690304 - 13962096
271793
ENSAPLT00000004717
13604679 - 13948452
343774
ENSAPLT00000033007
13635512 - 13948452
312941
ENSAPLT00000023766
13746940 - 13948452
201513