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Intron Name: Anas_platyrhynchos_platyrhynchos_9_13871582_13877700_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13871582 - 13877700

Intron Length:

6119

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTATG

5'SS Class:

strong_major

3'SS Sequence:

ATTGATTCTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

AATTGCTGAATT

Flanking Amino Acid:

TDVPFAIDRNGNIRNTEKLN

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.4

0.83

0.8

79.6

35.4

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

0.52

0.9

66.3

Minor 5ss

-1.8

2.8

39.3

40.3

Minor BPS

58.8

0.35

1.9

76.7

39.8

Associated Gene:

Gene:

CLSTN2

Ensembl Gene ID:

ENSAPLG00000004577

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023766

13746940 - 13948452

201513

ENSAPLT00000020951

13718095 - 13948452

230358

ENSAPLT00000046632

13732195 - 13948452

216258

ENSAPLT00000020868

13749447 - 13949202

199756

ENSAPLT00000035984

13690304 - 13962096

271793

ENSAPLT00000004717

13604679 - 13948452

343774

ENSAPLT00000033007

13635512 - 13948452

312941