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Intron Name: Anas_platyrhynchos_platyrhynchos_9_13877851_13888043_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13877851 - 13888043

Intron Length:

10193

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TGTGTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ACCTTTTTAATC

Flanking Amino Acid:

VKPVCKPGWQDWNKRIEYKP

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

88.6

27.1

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.79

0.9

76.9

42.1

Minor 5ss

42.7

-0.8

3.4

64.1

47.4

Minor BPS

64.1

0.42

1.2

63.17

37.5

Associated Gene:

Gene:

CLSTN2

Ensembl Gene ID:

ENSAPLG00000004577

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020951

13718095 - 13948452

230358

ENSAPLT00000046632

13732195 - 13948452

216258

ENSAPLT00000020868

13749447 - 13949202

199756

ENSAPLT00000035984

13690304 - 13962096

271793

ENSAPLT00000004717

13604679 - 13948452

343774

ENSAPLT00000033007

13635512 - 13948452

312941

ENSAPLT00000023766

13746940 - 13948452

201513