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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_13923930_13934840_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13923930 - 13934840
Intron Length:
10911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTGT
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
GTATCAATAATC
Flanking Amino Acid:
MQLTIGACWQGGEVTKPRFA
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
70.4
42.5
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
88.4
0.86
0.7
83.2
25.3
Minor 5ss
44
-0.7
3.3
65
46.2
Minor BPS
53
0.07
1.9
66.78
38.1

Associated Gene:

Gene:
CLSTN2
Ensembl Gene ID:
ENSAPLG00000004577
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023766
13746940 - 13948452
201513
ENSAPLT00000020951
13718095 - 13948452
230358
ENSAPLT00000046632
13732195 - 13948452
216258
ENSAPLT00000020868
13749447 - 13949202
199756
ENSAPLT00000035984
13690304 - 13962096
271793
ENSAPLT00000004717
13604679 - 13948452
343774
ENSAPLT00000033007
13635512 - 13948452
312941