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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14008627_14010541_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14008627 - 14010541
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TGATTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
REQSRLSATFQSKDVMSRFR
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
66.5
39.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.2
0.57
0.9
74.5
40.2
Minor 5ss
34.2
-1.8
3.2
45.7
43.5
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
TRIM42
Ensembl Gene ID:
ENSAPLG00000004454
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004565
14007644 - 14016812
9169