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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14011249_14012539_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14011249 - 14012539
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
GGTTTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
GTTTTTTTACAG
Flanking Amino Acid:
LSSTIVKFKQARQGVDNDLM
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
66.7
0.41
1
57.8
39
Major PPT
85.8
0.81
0.8
79.9
37.7
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
52
-0
1.8
60.52
41.6

Associated Gene:

Gene:
TRIM42
Ensembl Gene ID:
ENSAPLG00000004454
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004565
14007644 - 14016812
9169