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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14013364_14014068_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14013364 - 14014068
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACAC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTCTCTTCACA
Flanking Amino Acid:
QTVVYPRSAKIYWTCPIEDV
Intron Amino Acid Position:
629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68.8
36.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
88
0.86
0.6
83.6
24.7
Minor 5ss
34
-1.8
3.1
43.1
38
Minor BPS
67.6
0.55
1.7
80.35
35.4

Associated Gene:

Gene:
TRIM42
Ensembl Gene ID:
ENSAPLG00000004454
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004565
14007644 - 14016812
9169