Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14014297_14016538_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

14014297 - 14016538

Intron Length:

2242

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTGTAT

5'SS Class:

major

3'SS Sequence:

ATTTTACTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TGTACTTTAATA

Flanking Amino Acid:

GEGEWSEICKITTSDEHRII

Intron Amino Acid Position:

705

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

68.7

38.6

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

84.7

0.78

0.8

78.6

34.2

Minor 5ss

37.4

-1.4

3.5

55.6

48.6

Minor BPS

73.4

0.73

1.2

76.81

34.1

Associated Gene:

Gene:

TRIM42

Ensembl Gene ID:

ENSAPLG00000004454

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004565

14007644 - 14016812

9169