Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1405746_1417401_R

Intron Information:

Intron Rank:

153514

Intron Class:

major

Intron Phase:

Intron Coordinates:

1405746 - 1417401

Intron Length:

11656

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTTGG

5'SS Class:

strong_major

3'SS Sequence:

CTGTCACATGTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCACAT

U12 Branch Point Sequence:

ACTTCTGTCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

71.4

41.2

Major BPS

59.9

0.25

1.2

38.9

Major PPT

65.5

0.35

0.9

59.7

36.1

Minor 5ss

45.7

-0.5

2.5

58.3

46.4

Minor BPS

47.9

-0.1

2.4

64.77

42.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030065

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032663

1405742 - 1417986

12245

ENSAPLT00000021781

1405742 - 1430874

25133