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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14245172_14280380_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
14245172 - 14280380
Intron Length:
35209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCACTG
5'SS Class:
major
3'SS Sequence:
TGCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTCTTAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.3
0.39
1.2
57.3
47.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
89.3
0.88
0.7
87.9
29.5
Minor 5ss
39.7
-1.2
3.4
56
48.1
Minor BPS
72.4
0.78
1.6
87.23
39

Associated Gene:

Gene:
SPSB4
Ensembl Gene ID:
ENSAPLG00000009878
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044346
14180198 - 14291605
111408