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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14245172_14313738_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
14245172 - 14313738
Intron Length:
68567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGGCTC
5'SS Class:
major
3'SS Sequence:
TGCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTCTTAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
66.7
39
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
89.3
0.88
0.7
87.9
29.5
Minor 5ss
31.6
-2.1
3.4
42.1
39
Minor BPS
72.4
0.78
1.6
87.23
39

Associated Gene:

Gene:
SPSB4
Ensembl Gene ID:
ENSAPLG00000009878
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046879
14181010 - 14314393
133384