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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14328320_14328525_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14328320 - 14328525
Intron Length:
206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGCA
5'SS Class:
major
3'SS Sequence:
CTGCCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
ATGCTCTCATCC
Flanking Amino Acid:
EEKAPEAHEDECVLCHRSDT
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65.2
34.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
70.6
0.46
0.8
61.7
34.9
Minor 5ss
25.8
-2.8
3.1
31.5
42.2
Minor BPS
47.7
-0.2
1.8
58.21
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021209
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033835
14328274 - 14332907
4634