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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14329643_14329902_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14329643 - 14329902
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGCGTTCC
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAC
U12 Branch Point Sequence:
TCTTTCCTACTT
Flanking Amino Acid:
CCRWESACPTKSRLGSKTRR
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
65.8
34.7
Major BPS
58.9
0.22
1.3
58.4
40
Major PPT
77.9
0.63
1
79.2
26.8
Minor 5ss
36.7
-1.5
3
44.5
37.4
Minor BPS
53.5
0.19
1.9
75.59
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021209
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033835
14328274 - 14332907
4634