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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14391962_14395258_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14391962 - 14395258
Intron Length:
3297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTGCACTATCT
Flanking Amino Acid:
LVKTRLQLDARNRGEKRMSA
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
82.1
0.72
0.7
81.3
30.7
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
48.4
-0
2.2
78
43.9

Associated Gene:

Gene:
SLC25A36
Ensembl Gene ID:
ENSAPLG00000025953
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042106
14388448 - 14419929
31482