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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14395326_14402932_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14395326 - 14402932
Intron Length:
7607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAATATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCTTTTTTAAAT
Flanking Amino Acid:
QVHMISAGVAGFTAITTTNP
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
86
30.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
70.2
0.46
1
69.2
40.4
Minor 5ss
36.8
-1.5
3.3
51.2
45.7
Minor BPS
73.3
0.81
1.3
84.29
36.6

Associated Gene:

Gene:
SLC25A36
Ensembl Gene ID:
ENSAPLG00000025953
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042106
14388448 - 14419929
31482