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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14406398_14411192_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14406398 - 14411192
Intron Length:
4795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGATGTGAATA
Flanking Amino Acid:
RVSPGPLHCLKMILQKEGPR
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75
35.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
32.6
-2
3.3
40.4
40
Minor BPS
46.3
-0.2
2.1
60.19
40.2

Associated Gene:

Gene:
SLC25A36
Ensembl Gene ID:
ENSAPLG00000025953
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042106
14388448 - 14419929
31482