About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14420167_14423479_F


Intron Information:

Intron Rank:
146098

Intron Class:
major

Intron Phase:

Intron Coordinates:
14420167 - 14423479

Intron Length:
3313

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GTT|GTGAGTCAT

5'SS Class:
major

3'SS Sequence:
ATTCCCTCTATAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCCAAT

U12 Branch Point Sequence:
TTTTTTCCAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72
0.52
1
68.7
37.4

Major BPS
71.8
0.54
1.2
79
32.5

Major PPT
76.1
0.59
0.8
70
30.2

Minor 5ss
33
-1.9
3.1
47.1
42.6

Minor BPS
55.8
0.26
1.8
80.24
36

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

14420011 - 14424134
4124