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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14464106_14496385_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
14464106 - 14496385
Intron Length:
32280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TTGTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TATTTGCCAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
68.8
37.4
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
32.2
-2
2.7
39.2
40.4
Minor BPS
41.7
-0.7
2.4
53.03
42.1

Associated Gene:

Gene:
PXYLP1
Ensembl Gene ID:
ENSAPLG00000004284
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004395
14464017 - 14533341
69325