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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14470880_14471219_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
14470880 - 14471219
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGGAA
U12 Branch Point Sequence:
GTTTTCTTTCCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
50.5
0.01
1.4
51.7
43.9
Major PPT
88.9
0.88
0.7
81
36.6
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
44.4
-0.4
3.6
71.5
40.4

Associated Gene:

Gene:
PXYLP1
Ensembl Gene ID:
ENSAPLG00000004284
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020490
14470813 - 14533252
62440