About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14471453_14496385_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
14471453 - 14496385
Intron Length:
24933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TATTTGCCAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1.1
85.6
30.6
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
34.7
-1.7
2.6
44.5
42.8
Minor BPS
41.7
-0.7
2.4
53.03
42.1

Associated Gene:

Gene:
PXYLP1
Ensembl Gene ID:
ENSAPLG00000004284
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020490
14470813 - 14533252
62440