Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14473736_14496385_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

14473736 - 14496385

Intron Length:

22650

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TTGTTGTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAA

U12 Branch Point Sequence:

TATTTGCCAATG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.7

26.7

Major BPS

73.3

0.58

0.9

63.4

35.6

Major PPT

85.6

0.8

0.9

80.6

Minor 5ss

29.9

-2.3

3.2

41.3

45.2

Minor BPS

41.7

-0.7

2.4

53.03

42.1

Associated Gene:

Gene:

PXYLP1

Ensembl Gene ID:

ENSAPLG00000004284

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030771

14473633 - 14533252

59620