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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14496518_14517687_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14496518 - 14517687
Intron Length:
21170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTGTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTAAGGGTAAAT
Flanking Amino Acid:
LAFLSLSLQFLHLIPVNPIK
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
69.5
41.3
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
39.2
-1.2
3.4
59.1
45.3
Minor BPS
38.1
-0.8
2.7
62.63
46.8

Associated Gene:

Gene:
PXYLP1
Ensembl Gene ID:
ENSAPLG00000004284
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004395
14464017 - 14533341
69325