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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14510733_14512225_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
14510733 - 14512225
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TCTGTCTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
72.2
39.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
67.7
0.4
1
63.5
40.9
Minor 5ss
40.5
-1.1
3.3
52.3
45.8
Minor BPS
65.4
0.48
1.5
71.75
40.6

Associated Gene:

Gene:
PXYLP1
Ensembl Gene ID:
ENSAPLG00000004284
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025074
14509616 - 14533341
23726