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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14512367_14517687_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14512367 - 14517687
Intron Length:
5321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTAAGGGTAAAT
Flanking Amino Acid:
MILFPIFLILVHLIPVNPIK
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
87.7
26.2
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
38
-1.4
3.5
57.8
46.8
Minor BPS
38.1
-0.8
2.7
62.63
46.8

Associated Gene:

Gene:
PXYLP1
Ensembl Gene ID:
ENSAPLG00000004284
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030771
14473633 - 14533252
59620
ENSAPLT00000025074
14509616 - 14533341
23726
ENSAPLT00000020490
14470813 - 14533252
62440