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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14517850_14518685_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14517850 - 14518685
Intron Length:
836

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATATTATTATTT
Flanking Amino Acid:
IPTIAERSMEGHAPHYFKLV
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.8
0.76
0.9
81.3
36.4
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
52.2
0.15
1.8
72.06
38.9

Associated Gene:

Gene:
PXYLP1
Ensembl Gene ID:
ENSAPLG00000004284
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025074
14509616 - 14533341
23726
ENSAPLT00000020490
14470813 - 14533252
62440
ENSAPLT00000004395
14464017 - 14533341
69325
ENSAPLT00000030771
14473633 - 14533252
59620