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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14518813_14529624_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14518813 - 14529624
Intron Length:
10812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTGGTTTACCT
Flanking Amino Acid:
PDIDCTLQPSRKPSHPQLEA
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.4
0.68
0.7
78.3
30.3
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
53.5
0.19
2.1
78.9
44

Associated Gene:

Gene:
PXYLP1
Ensembl Gene ID:
ENSAPLG00000004284
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004395
14464017 - 14533341
69325
ENSAPLT00000030771
14473633 - 14533252
59620
ENSAPLT00000025074
14509616 - 14533341
23726
ENSAPLT00000020490
14470813 - 14533252
62440