About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14529765_14532320_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14529765 - 14532320
Intron Length:
2556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
AATTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACT
Flanking Amino Acid:
FCEMGELTQTGIVQHLRNGQ
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.7
0.71
0.8
78.2
35.3
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
72.4
0.78
1.3
83.79
37.4

Associated Gene:

Gene:
PXYLP1
Ensembl Gene ID:
ENSAPLG00000004284
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025074
14509616 - 14533341
23726
ENSAPLT00000020490
14470813 - 14533252
62440
ENSAPLT00000004395
14464017 - 14533341
69325
ENSAPLT00000030771
14473633 - 14533252
59620