Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14535312_14537750_R

Intron Information:

Intron Rank:

131782

Intron Class:

major

Intron Phase:

Intron Coordinates:

14535312 - 14537750

Intron Length:

2439

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAAGT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTGCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAA

U12 Branch Point Sequence:

TTTTTCTGCACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

77.2

37.6

Major BPS

76.9

0.67

0.8

77.7

26.1

Major PPT

83.5

0.75

0.8

32.1

Minor 5ss

35.3

-1.7

3.1

46.5

42.9

Minor BPS

62.4

0.38

1.9

79.77

36.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018115

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020854

14534647 - 14538459

3813