Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1462305_1463311_R

Intron Information:

Intron Rank:

135469

Intron Class:

major

Intron Phase:

Intron Coordinates:

1462305 - 1463311

Intron Length:

1007

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTGCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TTTTTACTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.9

84.2

27.6

Major BPS

84.4

0.85

1.1

34.5

Major PPT

79.7

0.67

0.9

76.9

37.3

Minor 5ss

44.8

-0.6

2.8

61.7

43.1

Minor BPS

62.7

0.39

1.9

81.2

33.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020296

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026366

1462200 - 1467738

5539

ENSAPLT00000023306

1462200 - 1484361

22162