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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1463450_1484072_R

Intron Information:

Intron Rank:
135470
Intron Class:
major
Intron Phase:
Intron Coordinates:
1463450 - 1484072
Intron Length:
20623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
TCATCCCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTCTCCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
72.1
0.5
0.8
65.4
30.3
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
62.1
0.38
1.7
73.2
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020296
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023306
1462200 - 1484361
22162