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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14643101_14643193_F

Intron Information:

Intron Rank:
144564
Intron Class:
major
Intron Phase:
Intron Coordinates:
14643101 - 14643193
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TGCTATGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAT
U12 Branch Point Sequence:
TTTGCTATGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
83.2
30.8
Major BPS
64.7
0.37
1.1
69.5
34.1
Major PPT
63.5
0.31
1
57.1
42.3
Minor 5ss
29.7
-2.3
2.6
33.7
41.6
Minor BPS
59.8
0.3
1.7
75.1
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027892
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043507
14642965 - 14735367
92403
ENSAPLT00000042193
14642965 - 14735367
92403
ENSAPLT00000041299
14642965 - 14735367
92403