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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_148347_159898_F

Intron Information:

Intron Rank:
125609
Intron Class:
major
Intron Phase:
Intron Coordinates:
148347 - 159898
Intron Length:
11552

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
AATGAAAAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
82.3
0.73
0.7
76.6
32
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
38.2
-0.9
2.1
49.42
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017672
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045842
147801 - 174378
26578
ENSAPLT00000027408
147801 - 201828
54028
ENSAPLT00000023370
147801 - 174378
26578