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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_14838350_14839049_F

Intron Information:

Intron Rank:
140948
Intron Class:
major
Intron Phase:
Intron Coordinates:
14838350 - 14839049
Intron Length:
700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTATAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.2
0.63
1
74.7
38.6
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
65.7
0.49
1.5
76.69
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025889
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043265
14772736 - 14839502
66767