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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15051879_15088557_F

Intron Information:

Intron Rank:
143335
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
15051879 - 15088557
Intron Length:
36679

Sequence Information:

Terminal Dinucleotides:
GT-TC
5'SS Sequence:
AAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TCCTATTCCTTTC|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GCTTTCCTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
24.3
-1.4
4.1
57.7
38.2
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
47.8
-0.1
1.9
59.01
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027213
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026389
15035124 - 15092559
57436
ENSAPLT00000022069
15041186 - 15092559
51374