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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15123622_15154520_F

Intron Information:

Intron Rank:
125162
Intron Class:
major
Intron Phase:
Intron Coordinates:
15123622 - 15154520
Intron Length:
30899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTCTTATGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.8
0.74
0.6
81.6
23.4
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
52.9
0.17
1.8
75.13
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017407
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022516
15099553 - 15154719
55167