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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15223758_15224132_R

Intron Information:

Intron Rank:
138783
Intron Class:
major
Intron Phase:
Intron Coordinates:
15223758 - 15224132
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTAATCTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.5
0.69
0.7
72.5
32.2
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
53.7
0.1
1.7
65.73
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022176
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032988
15223583 - 15226209
2627