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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15254362_15258922_R

Intron Information:

Intron Rank:
131891
Intron Class:
major
Intron Phase:
Intron Coordinates:
15254362 - 15258922
Intron Length:
4561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTGAT
U12 Branch Point Sequence:
GAATAAGTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
64.7
0.36
1.2
55.1
42.1
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
40.2
-0.6
2.2
55.66
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018173
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024290
15252263 - 15259499
7237
ENSAPLT00000031153
15254163 - 15261880
7718