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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_15274338_15297839_R

Intron Information:

Intron Rank:
147910
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
15274338 - 15297839
Intron Length:
23502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGGA
5'SS Class:
strong_major
3'SS Sequence:
GGCATGACTTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTTCTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.3
36.3
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
57.2
0.16
1
51.7
42.6
Minor 5ss
32.1
-2
3.1
41.4
44.9
Minor BPS
87.9
1.28
0.8
98.86
22.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026862
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048519
15274066 - 15322236
48171